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I ⁃
AWS HPC Overview
II ⁃
Getting Started on the Cloud
a. Pre-Requisites
a. Login the AWS Console
c. AWS EC2 Dashboard
d. Access AWS Cloud9
e. Start with the AWS CLI (Optional)
f. Using Amazon S3 (Optional)
g. Create an EC2 Instance (Optional)
h. IAM and Roles (Optional)
i. Summary
III ⁃
AWS ParallelCluster
a. Install AWS ParallelCluster
b. Initialization
c. Create a Cluster Config
d. Build an HPC Cluster
e. Log in to Your Cluster
f. Submit your first HPC job
g. Behind the Curtain
h. Terminate Your Cluster
IV ⁃
Running WRF
a. Create an autoscaling cluster wtih preloaded HPC applications.
b. So how does one preload applications?
c. Connect to the new cluster
d. The SGE scheduler (READING)
e. Autoscaling the ParallelCluster (READING)
f. Benchmarking WRF on the ParallelCluster
g. Terminate Your Cluster
V ⁃
Nextflow and Workflows
a. Genomics Lab Cloud9 Environment Setup
b. Running Nextflow
c. Batch-Squared Nextflow
d. AWS Resources
e. Automation
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AWS PEARC 2020 Workshop
> Authors
Authors
This tutorial is based on the work of many, including
Pierre-Yves Aquilanti
pierreya@amazon.com
Kevin Jorissen
jorissen@amazon.com
Lee Pang
pwyming@amazon.com
Tara Madhyastha
taramad@amazon.com
Ankit Malhotra
ankmal@amazon.com
Linda Hedges
hedgesl@amazon.com
Anh Tran
trhn@amazon.com